Supplementary Information: Fast size-determination of intact bacterial plasmids using nanofluidic channels
نویسندگان
چکیده
Materials and Methods Nanofluidic chips Nanofluidic chips were fabricated from a silicon wafer with 2 μm thermal oxide in cleanroom facilities at Chalmers University of Technology. Nanochannels were created by electron-beam lithography (JBX-9300FS/JEOL Ltd) and reactive ion etching (Plasmalab 100 ICP180/Oxford Plasma Technology). Microchannels were made by optical lithography (MA 6/Suss MicroTec) and subsequent reactive-ion etching. Inlets were created by optical lithography and deep reactive-ion etching (STS ICP/STS). The wafer was sealed with a 175 μm thick Pyrex lid through fusion bonding (AWF 12/65/Lenton) and diced into 25x25 mm2 chips (DAD3350/Disco). The methods are further described in reference [1].
منابع مشابه
Fast size-determination of intact bacterial plasmids using nanofluidic channels.
We demonstrate how nanofluidic channels can be used as a tool to rapidly determine the number and sizes of plasmids in bacterial isolates. Each step can be automated at low cost, opening up opportunities for general use in microbiology labs.
متن کاملCorrigendum: Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules
The rapid spread of antibiotic resistance - currently one of the greatest threats to human health according to WHO - is to a large extent enabled by plasmid-mediated horizontal transfer of resistance genes. Rapid identification and characterization of plasmids is thus important both for individual clinical outcomes and for epidemiological monitoring of antibiotic resistance. Toward this aim, we...
متن کاملDirect identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping
Bacterial plasmids are extensively involved in the rapid global spread of antibiotic resistance. We here present an assay, based on optical DNA mapping of single plasmids in nanofluidic channels, which provides detailed information about the plasmids present in a bacterial isolate. In a single experiment, we obtain the number of different plasmids in the sample, the size of each plasmid, an opt...
متن کاملNanofluidic channels of arbitrary shapes fabricated by tip-based nanofabrication.
Nanofluidic channels have promising applications in biomolecule manipulation and sensing. While several different methods of fabrication have been demonstrated for nanofluidic channels, a rapid, low-cost fabrication method that can fabricate arbitrary shapes of nanofluidic channels is still in demand. Here, we report a tip-based nanofabrication (TBN) method for fabricating nanofluidic channels ...
متن کاملDirect laser writing of sub-50 nm nanofluidic channels buried in glass for three-dimensional micro-nanofluidic integration.
We report on the fabrication of nanofluidic channels directly buried in silicate glass with transverse widths down to less than 50 nm using three-dimensional (3D) femtosecond laser direct writing. Using this technique, integrated micro-nanofluidic systems have been produced by simultaneously writing micro- and nanofluidic channels arranged into various 3D configurations in glass substrates. The...
متن کامل